Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs9394918 chr6:42670450 A/G 3.82E-6 129 41.97 50.8 23.82 KM Plot
TGCT rs939866 chr3:172463920 A/G 9.26E-5 132 25.8 37.53 42.18 KM Plot
TGCT rs941658 chr17:664166 C/T 7.43E-5 130 20.6 22.83 46.07 KM Plot
TGCT rs9462812 chr6:42581696 T/C 3.23E-8 132 37.7 50.8 20.6 KM Plot
TGCT rs9462815 chr6:42618739 C/T 2.46E-8 134 37.62 51.67 20.6 KM Plot
TGCT rs9471891 chr6:42616933 A/G 2.46E-8 134 37.62 51.67 20.6 KM Plot
TGCT rs9471896 chr6:42667047 G/T 4.45E-6 128 38.2 49.93 23.82 KM Plot
TGCT rs9478729 chr6:156988083 A/G 0.000105 133 39.38 88.17 59.27 KM Plot
TGCT rs9480369 chr6:156978185 T/C 0.000115 133 41.27 60.63 59.27 KM Plot
TGCT rs9480370 chr6:156978305 G/A 0.000105 133 39.38 88.17 59.27 KM Plot
TGCT rs9480375 chr6:157001779 G/A 0.000105 133 39.38 88.17 59.27 KM Plot
TGCT rs9480376 chr6:157006184 G/A 0.000105 133 39.38 88.17 59.27 KM Plot
TGCT rs9509630 chr13:21844314 G/A 5.93E-7 132 46.3 36.7 14.42 KM Plot
TGCT rs9509633 chr13:21844482 G/C 5.93E-7 132 46.3 36.7 14.42 KM Plot
TGCT rs9550180 chr13:113294971 A/G 9.52E-6 128 80.55 34.45 43.68 KM Plot